Our lab combines light & electron microscopy, transcription imaging and deep sequencing with computer vision and software development. We develop tools and solutions in order to study and model transcriptional regulation in development using C. elegans and other major model organisms.

We develop software in the context of ImgLib2, Fiji, and BigDataViewer and provide it open-source to the community.

Our lab is a part of the Berlin Institute of Medical System Biology (BIMSB), MDC, Berlin.

Lab Updates:

Next Microscopy Club meeting

Oct 11. Lasers: everything you need to know (Selma Anton, Lohse Lab); Zebrafish brain mapping (Nikita Vladimirov, Preibisch Lab) mClub page

Marwan Zouinkhi Has Joined Our Lab!

Marwan is a new PhD student in the lab. He’s developing software and imaging strategies to quantify circRNA expression in terabyte sized reconstructions of whole animal lightsheet microscopy acquisitions. Read more

Friedrich Preusser Has Joined Our Lab!

Friedrich is a new PhD student in the lab. He is investigating regulatory gene networks that drive morphological changes in the C. elegans dauer. Read more

The Berlin Summer Meeting Is Now!

Follow the Berlin Summer Meeting 8-10 June live on twitter: #BSM2017. Read more

Open PhD Position: Computer Vision and Machine Learning on Big Data

Be part of our H2020 Innovative Training Network Grant Read more

New publication: MaMuT

New publication on cell tracking using multiview reconstructions of lightsheet microscopy images. Read more

Nikita Vladimirov Has Joined Our Lab!

Nikita Vladimirov, PhD, is working on lightsheet microscopy with adaptive optics for imaging living organisms in optically anisotropic mounting media. Read more

Fiji + Knime Hackathon in Dresden

Klim just came back from the Hackathon in Dresden. Read more

Summary: EU-Life Course

Today we concluded the “EU-Life Course: Biological Image Reconstruction and Analysis”. Read more

Video tutorial: sample-based registration

New video tutorial on sample-based registration of lightsheet data using the Multiview Reconstruction. Read more

New publications: lightsheet image reconstruction

New publications on multiview reconstruction of lightsheet microscopy images. Read more

EU-Life Course: Biological Image Reconstruction and Analysis

November 14-18th we are organizing the EU-Life Course: “Biological Image Reconstruction and Analysis”. Read more

Our New Website is on the Air!

Welcome to our new lab website. Where you can learn more about our research and lab-life. Read more

The first lightsheet C.elegans video

We generated the first lightsheet video of a developing C.elegans. Read more

SysBio Lecture kick-off

BIMSB/MDC SysBio Lecture Series “Imaging Biological Systems” organized by Preibisch/Zinzen labs starts today. Read more

First smFISH images produced successfully

The first single molecule FISH images of C. elegans are produced in the lab by Laura. Read more

Lightsheet microscope delivered

Our Zeiss lightsheet Z.1 microscope arrived and is currently being assembled. Read more