Lab Updates:
Friedrich Preusser receives a PhD Fellowship by the Studienstiftung
Friedrich got awarded the PhD Fellowship by the German Academic Scholarship Foundation!
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Next Microscopy Club meeting
2019, March 6.
Marie Walde: Confocal detectors. Nikita Vladimirov: Deconvolution for dummies. mClub page
Our paper on Nature Methods cover
Vladimirov et al. paper on zebrafish brain imaging and circuit
probing was featured in Nature Methods.
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We wrote a review!
The lab’s first review is out!
Laura, Friedrich and Stephan summarized current state-of-the-art light microscopy methods and their application to C.elegans research.
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Laura Breimann got awarded the Add-on Fellowship for Interdisciplinary Science
Laura got awarded the Add-on Fellowship for Interdisciplinary Science from the Joachim Herz Foundation.
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circRTrain Course - Tissue Clearing, Lightsheet Microscopa and Data Handling
circRTrain students join the workshop organized by Stephan and Andrew Woehler.
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New collaborating PhD student - Peter Hirsch
Peter is a new shared PhD student together with the Kainmüller lab.
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New Publication: MTrack
Our new paper is out - MTrack: Automated Detection, Tracking, and Analysis of Dynamic Microtubules.
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New Publication: BigStitcher
Our new paper is out - BigStitcher: Reconstructing high-resolution image datasets of cleared and expanded samples.
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HFSP Grant
HFSP has provided 900,000$ in funding for a project on quantitative dissection of molecular determinants of enhancer function.
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NVIDIA GPU Grant
NVIDIA contributed a Quadro P6000 graphics card to support the research of Stephan, Klim, and Ella.
Marwan Zouinkhi Has Joined Our Lab!
Marwan is a new PhD student in the lab. He’s developing software and imaging strategies to quantify circRNA expression in terabyte sized reconstructions of whole animal lightsheet microscopy acquisitions.
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Friedrich Preusser Has Joined Our Lab!
Friedrich is a new PhD student in the lab. He is investigating regulatory gene networks that drive morphological changes in the C. elegans dauer.
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Open PhD Position: Computer Vision and Machine Learning on Big Data
Be part of our H2020 Innovative Training Network Grant
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New publication: MaMuT
New publication on cell tracking using multiview reconstructions of lightsheet microscopy images.
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Nikita Vladimirov Has Joined Our Lab!
Nikita Vladimirov, PhD, is working on lightsheet microscopy with adaptive optics for imaging living organisms in optically anisotropic mounting media.
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Summary: EU-Life Course
Today we concluded the “EU-Life Course: Biological Image Reconstruction and Analysis”.
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Video tutorial: sample-based registration
New video tutorial on sample-based registration of lightsheet data using the Multiview Reconstruction.
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New publications: lightsheet image reconstruction
New publications on multiview reconstruction of lightsheet microscopy images.
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EU-Life Course: Biological Image Reconstruction and Analysis
November 14-18th we are organizing the EU-Life Course: “Biological Image Reconstruction and Analysis”.
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Our New Website is on the Air!
Welcome to our new lab website. Where you can learn more about our research and lab-life.
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The first lightsheet C.elegans video
We generated the first lightsheet video of a developing C.elegans.
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SysBio Lecture kick-off
BIMSB/MDC SysBio Lecture Series “Imaging Biological Systems” organized by Preibisch/Zinzen labs starts today.
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First smFISH images produced successfully
The first single molecule FISH images of C. elegans are produced in the lab by Laura.
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Lightsheet microscope delivered
Our Zeiss lightsheet Z.1 microscope arrived and is currently being assembled.
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